IMPORTANT NOTICE: ISB-CGC no longer supports controlled access data (including the IGV
genomic viewer). If you have any questions, please contact us at feedback@isb-cgc.org.
A RESOURCE OF THE NCI CANCER RESEARCH DATA
COMMONS
ISB-CGC
Cancer Gateway in the Cloud
Access, Explore and Analyze Large-Scale Cancer Data Through the Google Cloud
Data Browsers
Browse BigQuery tables of metadata and molecular cancer data from the Genomic Data
Commons and other sources. Jump directly to a table to perform discovery and computation
via SQL.
Explore a comprehensive selection of cancer related data files in Google Cloud Storage
Buckets, such as raw sequencing, cancer nucleotide variation, pathology or radiology
images.
Browse the Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer which
relates cytogenetic changes, in particular gene fusions, to tumor characteristics.
Resources
A web interface to build cohorts based on clinical demographics and molecular filters.
Compare patient cohorts with various exploration tools including image
viewers and the Cancer Data File Browser.
Learn more about how to access and analyze cancer data through programmatic interfaces
including Google Cloud virtual machines and APIs.
A collection of notebooks written in R and Python, to serve as both tutorials or
analysis tools for a range of users; includes reproductions of Regulome Explorer
functionality.
ISB-CGC is a component of the NCI
Cancer Research Data Commons and has been funded in whole or in part with Federal funds
from the National Cancer Institute, National Institutes of Health, Department of Health and
Human Services, under Contract No. HHSN261201400008C and ID/IQ Agreement No. 17X146 under
Contract No. HHSN261201500003I.